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1.
Mol Phylogenet Evol ; 192: 107990, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-38072142

RESUMO

Goniodorididae is a family of small dorid nudibranchs distributed worldwide that feed on entoprocts, ascidians, and bryozoans. The evolutionary relationships between its taxa have been uncertain due to the limited taxa available for phylogenetic analyses; some genera being paraphyletic. The family includes a remarkable number of synonymized genera in which the species richness is unequally distributed, while some genera have dozens of species others are monospecific. Some clades are very uniform morphologically while others are considered highly variable. To increase backbone phylogenetic resolution a target enrichment approach of ultra-conserved elements was aimed at representative Goniodorididae species for the first time. Additionally, we increase species representation by including mitochondrial markers cytochrome c oxidase subunit I and ribosomal RNA 16S as well as nuclear Histone 3 and ribosomal RNA 18S from 109 Goniodorididae species, out of approximately 160 currently valid species. Maximum likelihood and Bayesian inference analyses were performed to infer the phylogeny of the family. As a result, two subfamilies and eleven genera were elucidated. The synonymized genera Bermudella, Cargoa, and Ceratodoris are here resurrected and a new genus, Naisdoris gen. nov., is described. The clades included taxa with shared prey preference, showing that trophic behavior could have driven species evolution and morphological uniqueness within the family Goniodorididae.


Assuntos
Gastrópodes , Animais , Filogenia , Teorema de Bayes , Moluscos/genética , RNA Ribossômico 16S/genética
2.
Microbiome ; 11(1): 130, 2023 06 13.
Artigo em Inglês | MEDLINE | ID: mdl-37312139

RESUMO

BACKGROUND: Nudibranchs comprise a group of > 6000 marine soft-bodied mollusk species known to use secondary metabolites (natural products) for chemical defense. The full diversity of these metabolites and whether symbiotic microbes are responsible for their synthesis remains unexplored. Another issue in searching for undiscovered natural products is that computational analysis of genomes of uncultured microbes can result in detection of novel biosynthetic gene clusters; however, their in vivo functionality is not guaranteed which limits further exploration of their pharmaceutical or industrial potential. To overcome these challenges, we used a fluorescent pantetheine probe, which produces a fluorescent CoA-analog employed in biosynthesis of secondary metabolites, to label and capture bacterial symbionts actively producing these compounds in the mantle of the nudibranch Doriopsilla fulva. RESULTS: We recovered the genome of Candidatus Doriopsillibacter californiensis from the Ca. Tethybacterales order, an uncultured lineage of sponge symbionts not found in nudibranchs previously. It forms part of the core skin microbiome of D. fulva and is nearly absent in its internal organs. We showed that crude extracts of D. fulva contained secondary metabolites that were consistent with the presence of a beta-lactone encoded in Ca. D. californiensis genome. Beta-lactones represent an underexplored group of secondary metabolites with pharmaceutical potential that have not been reported in nudibranchs previously. CONCLUSIONS: Altogether, this study shows how probe-based, targeted sorting approaches can capture bacterial symbionts producing secondary metabolites in vivo. Video Abstract.


Assuntos
Produtos Biológicos , Gastrópodes , Animais , Bactérias/genética , Corantes Fluorescentes , Lactonas , Preparações Farmacêuticas
3.
Mol Phylogenet Evol ; 171: 107470, 2022 06.
Artigo em Inglês | MEDLINE | ID: mdl-35358690

RESUMO

Nudibranchs are charismatic marine gastropods that lack a shell in the adult stage. While most nudibranchs feed on sessile animals such as sponges, bryozoans, and cnidarians, the nudibranch genus Gymnodoris Stimpson, 1855 evolved a more active and predatory lifestyle, including sea slug predation, cannibalism, and oddly enough, fish-fin parasitism. At the beginning of our work, no phylogenetic hypothesis existed for the genus, nor a clear picture of how Gymnodoris is related to other nudibranchs. Here we set out to reconstruct Gymnodoris phylogeny, investigate species diversity, and clarify the status of the genus name Analogium, which had been proposed for members of the genus with a linear gill filament arrangement. We present the first phylogenetic hypothesis for Gymnodoris, reconstructed by maximum likelihood and Bayesian inference using two mitochondrial and two nuclear loci, with gill filament arrangement plotted on the phylogeny. The backbone of the phylogeny remains unresolved with theseloci, however, we found that Gymnodoris comprises three main well-supported clades, which we refer to as the "subornata", "citrina" and "varied" clade, the latter two clades being comprised of several well-supported subclades. The sister group to Gymnodoris is a clade including the genera Vayssierea and Lecithophorus. Based on ABGD and PTP species delimitation methods, we conservatively estimate 65-70 species comprise our dataset. We further estimate that approximately 81% of the species we sampled are undescribed, and note that a linear gill filament arrangement has evolved multiple times within the genus. Gymnodoris is only monophyletic when the species with a linear gill arrangement are included. Therefore, at this time, we agree with the synonymy of Analogium striata with Gymnodoris striata by Rudman and Darvell (1990) and that the genus name Analogium is warranted as a junior synonym of Gymnodoris. Given the extensive undescribed diversity, and lack of resolution at some of the nodes in the phylogeny, patterns of diversification in diet are impossible to discern at this time and will require a large effort to both describe Gymnodoris species diversity and the diets of these candidate species.


Assuntos
Gastrópodes , Animais , Teorema de Bayes , Gastrópodes/genética , Filogenia , Simbiose
4.
Zookeys ; 1083: 169-210, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35115877

RESUMO

Species identities of Goniobranchus nudibranchs with white bodies and various marginal bands have long been problematic. In this study, specimens of these Goniobranchus nudibranchs from the Philippines, Peninsular Malaysia, Japan, Papua New Guinea, and Madagascar were analyzed and molecular data were obtained in order to re-examine the relationships between species within this "white Goniobranchus with marginal bands" group. The analyses clearly recovered six species groups corresponding to the described species Goniobranchusalbonares, G.preciosus, G.rubrocornutus, G.sinensis, and G.verrieri as well as one new species, G.fabulus Soong & Gosliner, sp. nov. Notably, G.preciosus, G.sinensis, G.rubrocornutus, G.verrieri, and G.fabulus Soong & Gosliner, sp. nov. exhibit color variation and polymorphism, suggesting that some aspects of color patterns (e.g., presence or absence of dorsal spots) may not always be useful in the identification of species in the "white Goniobranchus with marginal bands" group, whereas other features such as gill and rhinophore colors and the arrangement and colors of the mantle marginal bands are more diagnostic for each species.

5.
Cladistics ; 37(6): 647-676, 2021 12.
Artigo em Inglês | MEDLINE | ID: mdl-34841586

RESUMO

The genus Thuridilla Bergh, 1872 comprises mostly tropical sap-sucking sea slugs species with flamboyantly coloured forms. However, the potential for cryptic or pseudocryptic species masked by convergent or polymorphic colour patterns has not been tested using molecular characters. In this study, we sampled 20 of the 23 recognized worldwide species and performed the most comprehensive molecular phylogenetic analysis of the genus to date using a multi-locus approach combining two mitochondrial (cytochrome c oxidase subunit I, 16S rRNA) and two nuclear (Histone H3, 28S rRNA) genes using maximum likelihood, maximum-parsimony and Bayesian criteria. Three molecular species delimitation methods (ABGD, GMYC, bPTP) and the morphology of radular teeth were additionally used to aid in species delimitation. Our analyses supported 35 species within Thuridilla, of which more than one-third (13) are part of a single radiation here named the Thuridilla gracilis (Risbec, 1928) species-complex. This complex includes T. gracilis, T. splendens (Baba, 1949), T. bayeri (Er. Marcus, 1965), and T. ratna (Er. Marcus, 1965), plus nine additional undescribed species. All 13 species are distinguishable by radular characters, external morphology and their DNA. The detection of this radiation led diversity of Thuridilla to be underestimated by about 25% and provides a new comparative system for studying the role of colour patterns in marine diversification.


Assuntos
Gastrópodes , Animais , Gastrópodes/anatomia & histologia , Gastrópodes/classificação , Gastrópodes/genética , Filogenia , Pigmentação
6.
Zootaxa ; 4981(1): 151165, 2021 Jun 03.
Artigo em Inglês | MEDLINE | ID: mdl-34186951

RESUMO

The genus Orodoris Bergh, 1875 is a small genus that together with Miamira Bergh, 1875, was considered as a junior synonym of Ceratosoma A. Adams Reeve, 1850. This decision was based on a morphological phylogenetic study conducted in 1999 that recovered the monophyly of the Ceratosoma. However, in 2012, molecular evidences led to the resurrection of Miamira, while Orodoris was retained as a junior synonym of Miamira with no further details. Here we revise the status of the genus Orodoris in light of the rediscovery of M. striata (syn. Orodoris striata Eliot, 1904). Our phylogenetic analysis revealed a close sister relationship between Miamira striata and Miamira miamirana Bergh, 1875 which nested within the Miamira clade. Therefore, to retain the monophyly of Miamira, the genus Orodoris should be maintained as a junior synonym of the former. This study proposes a neotype for M. striata and underscores the importance of reviewing historical taxonomic changes and investigating ancient descriptions prior to describing new taxa. Our study also confirms that Miamira magnifica Eliot, 1910 from the Indian Ocean and Miamira flavicostata Baba, 1940 from the Pacific Ocean represent two distinct, sister species.


Assuntos
Gastrópodes/classificação , Animais , Filogenia
7.
Zootaxa ; 4890(1): zootaxa.4890.1.1, 2020 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-33311242

RESUMO

Nudibranchs in the family Discodorididae are generally medium (~30mm) to large ( 50mm) in size, sometimes cryptic, and are found in almost every marine ecosystem around the world. The diversity and systematics of the genera within Discodorididae are poorly understood and have led to numerous taxonomic changes. Hoplodoris Bergh, 1880 has recently been considered a synonym of Asteronotus Ehrenberg, 1831; however, morphological and molecular phylogenetic analyses reveal a distinct separation between these two genera. Here we provide a re-description of the type species Hoplodoris desmoparypha as well as descriptions of four undescribed species of Asteronotus and Hoplodoris. Bayesian inference and maximum likelihood analyses of two mitochondrial and two nuclear genes were used to evaluate the phylogenetic positions of the new species and clarify the relationships between Asteronotus and Hoplodoris to the rest of the Discodorididae. Based on our results, Hoplodoris is removed from synonymy with Asteronotus. Descriptions for Asteronotus markaensis sp. nov., and Asteronotus namuro sp. nov. from the Red Sea, as well as Hoplodoris balbon sp. nov. and Hoplodoris rosans sp. nov. from the western Pacific are provided.


Assuntos
Ecossistema , Gastrópodes , Animais , Teorema de Bayes , Filogenia
8.
Zootaxa ; 4819(3): zootaxa.4819.3.1, 2020 Jul 24.
Artigo em Inglês | MEDLINE | ID: mdl-33056090

RESUMO

This paper describes four new Chromodoris species: Chromodoris balat sp. nov., Chromodoris baqe sp. nov., Chromodoris kalawakan sp. nov., and Chromodoris quagga sp. nov. We were able to distinguish 44 species level lineages within Chromodoris, expanding the Indo-Pacific species from 39 species. The phylogeny presented here provides slightly greater resolution of species relationships than do previous studies of this genus. Layton et al. (2018), determined that variable color patterns made it difficult to differentiate in living specimens of distinct species, but we provide some additional stable color characters that potentially help resolve this issue, as well as additional internal features that are useful in species delimitation and correlate with the molecular phylogenetic analysis.


Assuntos
Gastrópodes , Animais , Filogenia
9.
J Molluscan Stud ; 86(3): 186-200, 2020 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-34024980

RESUMO

Berthella californica (W. H. Dall, 1900) is a widespread species of heterobranch sea slug distributed across the North Pacific Ocean, from Korea and Japan to the Galapagos Islands. Two distinct morphotypes are observed in B. californica, which differ in external coloration, egg-mass morphology and geographic distribution (with the exception of a small range overlap in Southern California). Molecular and morphological data obtained in this study reveals that these two morphotypes constitute distinct species. The name B. californica (type locality: San Pedro, California) is retained for the southern morphotype, whereas the name Berthella chacei (J. Q. Burch, 1944) (type locality: Crescent City, California) is resurrected for the northern morphotype. Moreover, molecular phylogenetic analyses recovered B. californica as sister to Berthellina, in a well-supported clade separate from Berthella, suggesting that the classification of B. californica may need additional revision.

10.
Mol Phylogenet Evol ; 144: 106698, 2020 03.
Artigo em Inglês | MEDLINE | ID: mdl-31812568

RESUMO

Coral reefs are among the most biologically diverse ecosystems of the world, yet little is known about the processes creating and maintaining their diversity. Ecologically, corallivory in nudibranchs resembles phytophagy in insects- a process that for decades has served as a model for ecological speciation via host shifting. This study uses extensive field collections, DNA sequencing, and phylogenetic analyses to reconstruct the evolutionary history of coral-associated nudibranchs and assess the relative roles that host shifting and geography may have played in their diversification. We find that the number of species is three times higher than the number previously known to science, with evidence for both allopatric and ecological divergence through host shifting and host specialization. Results contribute to growing support for the importance of ecological diversification in marine environments and provide evidence for new species in the genus Tenellia.


Assuntos
Antozoários/fisiologia , Ecossistema , Gastrópodes/classificação , Gastrópodes/genética , Especiação Genética , Animais , Evolução Biológica , Recifes de Corais , Ecologia , Filogenia , Filogeografia , Análise de Sequência de DNA
11.
Zool J Linn Soc ; 184(1): 31-65, 2018 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-30319150

RESUMO

Molecular and morphological data from newly collected specimens and a review of the literature and type material indicate that the widespread tropical sea hare Dolabrifera dolabrifera is a species complex of five genetically distinct taxa. The name Dolabrifera dolabrifera is retained for a widespread species in the Indo-Pacific tropics. Dolabrifera nicaraguana is endemic to the eastern Pacific. Dolabrifera ascifera, D. virens and a new species described herein are restricted to the tropical Atlantic, with partially overlapping ranges in the Caribbean region and St. Helena. The temperate Pacific species Dolabrifera brazieri is also distinct and endemic to temperate southeastern Australia and New Zealand. These species of Dolabrifera constitute highly divergent lineages and most contain unique internal anatomical characteristics, particularly in the male reproductive morphology and shell shape, making them relatively easy to identify upon dissection. However, externally all these species are extremely variable in colour pattern and morphology and are virtually indistinguishable. This is particularly problematic for identification in the Atlantic Ocean where three species co-occur in the Caribbean region.

12.
Zootaxa ; 4444(5): 501-529, 2018 Jul 12.
Artigo em Inglês | MEDLINE | ID: mdl-30313904

RESUMO

Advances in molecular systematics have led to a rapid increase in the identification of cryptic and pseudocryptic species in organisms exhibiting diverse and complex coloration with complicated taxonomic histories. A recent molecular phylogenetic analysis of nudibranchs in the genus Glossodoris (Mollusca: Gastropoda: Heterobranchia: Chromodorididae) and related genera identifies multiple cryptic and pseudocryptic species complexes, one within Glossodoris pallida and three within Glossodoris cincta, and support for three new species of Doriprismatica. Morphological analyses of color pattern, radular structure, buccal mass, and reproductive system support these identifications. Descriptions for Glossodoris buko sp. nov., Glossodoris bonwanga sp. nov., Glossodoris andersonae sp. nov., Glossodoris acosti sp. nov., and what will retain the name Glossodoris sp. cf. cincta are provided here, in addition to descriptions for new species Doriprismatica balut sp. nov., Doriprismatica rossi sp. nov., and Doriprismatica marinae sp. nov.. Glossodoris pallida and G. buko exhibit extreme differences in radular structure in addition to a clear biogeographic split in range. Glossodoris bonwanga, G. andersonae, G. acosti and G. sp. cf. cincta, share morphological and geographic differences but these are not as pronounced as in G. pallida and G. buko. More detailed study of the G. cincta complex is necessary to resolve some remaining systematic challenges. Doriprismatica balut is clearly distinct from all other congeners based on molecular and morphological characters. In contrast, D. rossi and D. marinae are not strongly divergent genetically, but have major morphological divergences that clearly distinguish them.


Assuntos
Gastrópodes , Filogenia , Animais , Moluscos
13.
Mol Phylogenet Evol ; 124: 27-36, 2018 07.
Artigo em Inglês | MEDLINE | ID: mdl-29476907

RESUMO

Chromodoris is a genus of colourful nudibranchs that feed on sponges and is found across the Indo-Pacific. While this was once the most diverse chromodorid genus, recent work has shown that the genus should be restricted to a monophyletic lineage that contains only 22 species, all of which exhibit black pigmentation and planar spawning behaviour. Earlier phylogenies of this group are poorly resolved and thus additional work is needed to clarify species boundaries within Chromodoris. This study presents a maximum-likelihood phylogeny based on mitochondrial loci (COI, 16S) for 345 Chromodoris specimens, including data from 323 new specimens and 22 from GenBank, from across the Indo-Pacific. Species hypotheses and phylogenetic analysis uncovered 39 taxa in total containing 18 undescribed species, with only five of 39 taxa showing stable colour patterns and distinct morphotypes. This study also presents the first evidence for regional mimicry in this genus, with C. colemani and C. joshi displaying geographically-based variation in colour patterns which appear to match locally abundant congenerics, highlighting the flexibility of these colour patterns in Chromodoris nudibranchs. The current phylogeny contains short branch lengths, polytomies and poor support at interior nodes, which is indicative of a recent radiation. As such, future work will employ a transcriptome-based exon capture approach for resolving the phylogeny of this group. In all, this study included 21 of the 22 described species in the Chromodoris sensu stricto group with broad sampling coverage from across the Indo-Pacific, constituting the most comprehensive sampling of this group to date. This work highlights several cases of undocumented diversity, ultimately expanding our knowledge of species boundaries in this group, while also demonstrating the limitations of colour patterns for species identification in this genus.


Assuntos
Gastrópodes/fisiologia , Mimetismo Molecular/genética , Pigmentação/genética , Animais , Biodiversidade , DNA Mitocondrial/genética , Gastrópodes/genética , Geografia , Funções Verossimilhança , Mitocôndrias/genética , Filogenia , Análise de Sequência de DNA , Especificidade da Espécie
14.
Cladistics ; 34(1): 41-56, 2018 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-34641635

RESUMO

Chromodorid nudibranchs (Chromodorididae) are brightly coloured sea slugs that live in some of the most biodiverse and threatened coral reefs on the planet. However, the evolutionary relationships within this family have not been well understood, especially in the genus Glossodoris. Members of Glossodoris have experienced large-scale taxonomic instability over the last century and have been the subject of repeated taxonomic changes, in part due to morphological characters being the sole traditional taxonomic sources of data. Changing concepts of traditional generic boundaries based on morphology also have contributed to this instability. Despite recent advances in molecular systematics, many aspects of chromodorid taxonomy remain poorly understood, particularly at the traditional species and generic levels. In this study, 77 individuals comprising 32 previously defined species were used to build the most robust phylogenetic tree of Glossodoris and related genera using mitochondrial genes cytochrome c oxidase subunit I and 16S, and the nuclear gene 28S. Bayesian inference, maximum likelihood, and maximum parsimony analyses verify the most recent hypothesized evolutionary relationships within Glossodoris. Additionally, a pseudocryptic and cryptic species complex within Glossodoris cincta and a pseudocryptic complex within Glossodoris pallida emerged, and three new species of Doriprismatica are identified.

15.
R Soc Open Sci ; 4(10): 171095, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-29134101

RESUMO

Molecular estimates of phylogenetic relationships rely heavily on multiple sequence alignment construction. There has been little consensus, however, on how to properly address issues pertaining to the alignment of variable regions. Here, we construct alignments from four commonly sequenced molecular markers (16S, 18S, 28S and cytochrome c oxidase subunit I) for the Nudibranchia using three different methodologies: (i) strict mathematical algorithm; (ii) exclusion of variable or divergent regions and (iii) manually curated, and examine how different alignment construction methods can affect phylogenetic signal and phylogenetic estimates for the suborder Doridina. Phylogenetic informativeness (PI) profiles suggest that the molecular markers tested lack the power to resolve relationships at the base of the Doridina, while being more robust at family-level classifications. This supports the lack of consistent resolution between the 19 families within the Doridina across all three alignments. Most of the 19 families were recovered as monophyletic, and instances of non-monophyletic families were consistently recovered between analyses. We conclude that the alignment of variable regions has some effect on phylogenetic estimates of the Doridina, but these effects can vary depending on the size and scope of the phylogenetic query and PI of molecular markers.

16.
PLoS One ; 11(12): e0167800, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-27977703

RESUMO

Tergipedidae represents a diverse and successful group of aeolid nudibranchs, with approximately 200 species distributed throughout most marine ecosystems and spanning all biogeographical regions of the oceans. However, the systematics of this family remains poorly understood since no modern phylogenetic study has been undertaken to support any of the proposed classifications. The present study is the first molecular phylogeny of Tergipedidae based on partial sequences of two mitochondrial (COI and 16S) genes and one nuclear gene (H3). Maximum likelihood, maximum parsimony and Bayesian analysis were conducted in order to elucidate the systematics of this family. Our results do not recover the traditional Tergipedidae as monophyletic, since it belongs to a larger clade that includes the families Eubranchidae, Fionidae and Calmidae. This newly recovered clade is here referred to as Fionidae, the oldest name for this taxon. In addition, the present molecular phylogeny does not recover the traditional systematic relationships at a generic level, and therefore, systematic changes are required. We recognize the following clades within Fionidae: Calma, Cuthona, Cuthonella, Eubranchus, Fiona, Murmania, Tenellia, Tergipes, Tergiposacca gen. nov., Rubramoena gen. nov. and Abronica gen. nov. The type species of Tergiposacca, T. longicerata nov. sp. is described. The other two new genera have a previously described species as their type species. Most of these taxa, with the exceptions of Eubranchus, Tergipes and Fiona are composed of radically different constituent species from their traditional membership, but appear to be supported by morphological synapomorphies as well as molecular data. Aenigmastyletus, Catriona, Phestilla, Tenellia and Trinchesia are nested within other clades and, thus are here considered as synonyms of the larger clades. The phylogenetic position and validity of Myja, Guyvalvoria, Leostyletus and Subcuthona still need to be tested in future studies when material becomes available.


Assuntos
Gastrópodes/genética , Filogenia , Animais , Teorema de Bayes , Gastrópodes/classificação , Funções Verossimilhança , RNA Ribossômico 16S/genética
17.
Zootaxa ; 4147(5): 501-37, 2016 Aug 08.
Artigo em Inglês | MEDLINE | ID: mdl-27515632

RESUMO

Based on morphological data a total of nine native species of Philinidae are recognized from the northeastern Pacific including the Bering Sea and the adjacent Arctic Ocean (Beaufort Sea). Four of them have been previously described: Philine ornatissima Yokoyama, 1927, Philine bakeri Dall, 1919, Philine polystrigma (Dall, 1908), and Philine hemphilli Dall, 1919. Five of them are new and described herein: Philine mcleani sp. nov., Philine baxteri sp. nov., Philine malaquiasi sp. nov., Philine wareni sp. nov., and Philine harrisae sp. nov. These species display a substantial degree of variation in internal and external morphological traits (i.e., presence/absence of gizzard plates, different radular structure and tooth morphology, various reproductive anatomical features) and it is likely that they belong to different clades (genera). However, in the absence of a comprehensive phylogeny for Philine, they are here provisionally regarded as Philine sensu lato. In addition to the nine native species, two introduced species: Philine orientalis A. Adams, 1854 and Philine auriformis Suter, 1909 are here illustrated and compared to the native species to facilitate identification. Finally, two species previously considered members of Philinidae are examined anatomically and confirmed as members of Laonidae, Laona californica (Willett, 1944) and Philinorbidae, Philinorbis albus (Mattox, 1958), based on morphological data.


Assuntos
Gastrópodes/anatomia & histologia , Gastrópodes/classificação , Exoesqueleto/anatomia & histologia , Animais , Regiões Árticas , Masculino , Oceano Pacífico
18.
Mol Phylogenet Evol ; 97: 19-31, 2016 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-26752594

RESUMO

Recent studies investigating vicariance and dispersal have been focused on correlating major geological events with instances of taxonomic expansion by incorporating the fossil record with molecular clock analyses. However, this approach becomes problematic for soft-bodied organisms that are poorly represented in the fossil record. Here, we estimate the phylogenetic relationships of the nudibranch genus Acanthodoris Gray, 1850 using three molecular markers (16S, COI, H3), and then test two alternative geologically calibrated molecular clock scenarios in BEAST and their effect on ancestral area reconstruction (AAR) estimates employed in LAGRANGE. The global temperate distribution of Acanthodoris spans multiple geological barriers, including the Bering Strait (∼5.32 Mya) and the Baja Peninsula (∼5.5 Mya), both of which are used in our dating estimates. The expansion of the Atlantic Ocean (∼95-105 Mya) is also used to calibrate the relationship between A. falklandica Eliot, 1905 and A. planca Fahey and Valdés, 2005, which are distributed in southern Chile and South Africa respectively. Phylogenetic analyses recovered strong biogeographical signal and recovered two major clades representing northern and southern hemispheric distributions of Acanthodoris. When all three geological events are applied to the calibration analyses, the age for Acanthodoris is estimated to be mid-Cretaceous. When the expansion of the Atlantic Ocean is excluded from our analyses, however, Acanthodoris is estimated to be much younger, with a divergence time estimate during the Miocene. Regardless of divergence estimates, our AAR suggests that Acanthodoris may have origins in the Atlantic Ocean with the Atlantic acting as a dispersal point to the northeastern Pacific. These results suggest that Acanthodoris exhibits a rare instance of western trans-arctic expansion. This study also shows that northeast Pacific specimens of A. pilosa should be regarded as A. atrogriseata and that A. serpentinotus should be regarded as a synonym of A. pina.


Assuntos
Calibragem , Gastrópodes/classificação , Filogenia , Animais , Regiões Árticas , Oceano Atlântico , Chile , Feminino , Fósseis , Gastrópodes/genética , Masculino , Oceano Pacífico , Filogeografia , África do Sul , Fatores de Tempo
19.
Zootaxa ; 3973(1): 57-101, 2015 Jun 16.
Artigo em Inglês | MEDLINE | ID: mdl-26249713

RESUMO

The nudibranch family Dotidae has been an extremely challenging group to study taxonomically due to their small body size, lack of distinct internal morphological differences and similar color patterns. This integrative systematic study of the Dotidae encompasses 29 individuals from the north Atlantic and Mediterranean, and 11 from the Indo-Pacific. Two mitochondrial genes, 16S, COI, and a nuclear gene, H3, were sequenced for 31 specimens and Bayesian and RAxML concatenated analyses were run. Dotidae is monophyletic and possesses strong geographic structure. Co-evolution between some of the north Atlantic taxa and their hydroid prey is apparent, thus supporting the hypothesis that speciation may be correlated with prey diversification. This study also supports the notion that the hydroid prey is a reliable indicator for distinguishing between cryptic species. Doto coronata Gmelin, the type species for the genus Doto, is re-described and a neotype, collected near Goes, Netherlands, is designated. From the molecular data, D. millbayana, D. dunnei, D. koenneckeri, D. maculata Lemche within the Doto coronata species complex, are confirmed to be distinct from D. coronata. Based on molecular data, specimens previously identified as D. coronata from South Africa are determined to represent a new species. It is described here and named Doto africoronata n. sp. Kabeiro n. gen. is introduced for the clade of elongate individuals from the Indo-Pacific, which diverges by 11.6% or greater in 16S from short-bodied Doto species. These elongate species are sister to all the short-bodied species and possess an enlarged pericardium, elongate cerata, a reproductive system with a pocketed prostate (penial gland), and an external tube-like digestive gland, which are absent in short-bodied Doto. Species of Kabeiro described here are: Kabeiro christianae n. sp., Kabeiro rubroreticulata n. sp., and Kabeiro phasmida n. sp. from the Philippines. The Indo-Pacific short-bodied species, Doto greenamyeri n. sp. from Papua New Guinea is also described.


Assuntos
Gastrópodes/classificação , Gastrópodes/genética , Distribuição Animal , Estruturas Animais/anatomia & histologia , Estruturas Animais/crescimento & desenvolvimento , Animais , Tamanho Corporal , Ecossistema , Feminino , Gastrópodes/anatomia & histologia , Gastrópodes/crescimento & desenvolvimento , Masculino , Países Baixos , Tamanho do Órgão , Filipinas , Filogenia , África do Sul
20.
Mol Phylogenet Evol ; 88: 16-27, 2015 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-25837732

RESUMO

Recent investigations into the evolution of the Onchidorididae using morphological based methods have resulted in low support for relationships among genera. This study aims to determine if molecular data corroborates recent morphological interpretations of the evolution of Onchidorididae. Five genetic markers: 16S, 18S, 28S, cytochrome c oxidase 1 (COI) and histone 3 (H3), were sequenced from 32 species comprising Onchidorididae and five other families, three from Phanerobranchia and two from Cryptobranchia. Phylogenies were estimated using maximum likelihood, and Bayesian inference analyses; with both yielding similar topologies. Molecular analyses resulted in high support for the monophyly of the suctorian clade and the placement of the genera within Onchidorididae. However, the Onchidorididae forms a paraphyletic grouping due to the recovery of the Goniodorididae and the Akiodorididae nested within family. In addition, the placement of Corambe as the most derived member of Onchidorididae is contradicted by the present study. Rather it is sister to a large clade that includes Acanthodoris and the species traditionally placed in Onchidoris and Adalaria, now defined as Onchidorididae. We have chosen to maintain Corambidae as a distinct taxon (including Corambe and Loy), sister to Onchidorididae. We also maintain Goniodorididae, Akiodorididae and Calycidoridae (including Calycidoris and Diaphorodoris), which along with the Onchidorididae and Corambidae comprise the suctorian superfamily Onchidoridoidea. Ancestral character reconstruction also suggests that the formation of a gill pocket, a character that currently defines the Cryptobranchia, may have evolved multiple times from an ancestor that lacked the ability to retract its gills into a fully formed gill pocket. The diversity of gill morphology displayed by the Onchidoridoidea will help give new insight into the evolution of this complex character within the Nudibranchia.


Assuntos
Gastrópodes/classificação , Filogenia , Animais , Teorema de Bayes , Evolução Biológica , Feminino , Gastrópodes/anatomia & histologia , Gastrópodes/genética , Genitália Feminina/anatomia & histologia , Brânquias/anatomia & histologia , Análise de Sequência de DNA
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